Bifidobacterium pseudolongum
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium pseudolongum
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium pseudolongum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium pseudolongum; sb__Bifidobacterium pseudolongum subsp. pseudolongum
NCBI Strain Identifiers LMG 11571
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000771225.1)
Genome Characteristics
CheckM Completeness 98.89%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 11
N50 Contigs 1,029,918 bp
Longest Contig 1,029,918 bp
Scaffold Count 11
N50 Scaffolds 1,029,918 bp
Longest Scaffold 1,029,918 bp
Genome Size 1,898,684 bp
Protein Count 1,570
Coding Density 88.87%
GC Percentage 63.06%
Ambiguous Bases 3
GTDB representative GCA_000771225.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Bifpse_sub.pse
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02673445
Country None
Date 2014-8-18
Genbank Assembly Accession GCA_000741325.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Swine feces
Latitude Longitude None
Molecule Count N/A
CDS Count 1,554
Refseq Category na
Seq Rel Date 2014/08/18
Spanned Gaps 0
Species Taxid 1694
SSU Count 1
Submitter University of Parma
Taxid 31954
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JGZH00000000.1