Pectobacterium atrosepticum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pectobacterium; s__Pectobacterium atrosepticum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Pectobacterium; s__Pectobacterium atrosepticum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Pectobacterium; s__Pectobacterium atrosepticum
NCBI Strain Identifiers 21A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001038685.1)
Genome Characteristics
CheckM Completeness 99.96%
CheckM Contamination 0.25%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 2
N50 Contigs 4,991,806 bp
Longest Contig 4,991,806 bp
Scaffold Count 2
N50 Scaffolds 4,991,806 bp
Longest Scaffold 4,991,806 bp
Genome Size 5,024,250 bp
Protein Count 4,469
Coding Density 86.38%
GC Percentage 51.11%
Ambiguous Bases 9
GTDB representative GCA_001038685.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM74096v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02983234
Country Belarus
Date 2014-8-18
Genbank Assembly Accession GCA_000740965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source potato stems
Latitude Longitude None
Molecule Count 2
CDS Count 4,483
Refseq Category na
Seq Rel Date 2014/08/18
Spanned Gaps 0
Species Taxid 29471
SSU Count 7
Submitter Belarus State University
Taxid 29471
Total Gap Length 0
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None