Nitrosococcus oceani
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Nitrosococcales; f__Nitrosococcaceae; g__Nitrosococcus; s__Nitrosococcus oceani
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Chromatiales; f__Chromatiaceae; g__Nitrosococcus; s__Nitrosococcus oceani
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Chromatiales; f__Chromatiaceae; g__Nitrosococcus; s__Nitrosococcus oceani; x__Nitrosococcus oceani C-27
NCBI Strain Identifiers C-27
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000012805.1)
Genome Characteristics
CheckM Completeness 97.59%
CheckM Contamination 2.36%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 541
N50 Contigs 69,108 bp
Longest Contig 169,274 bp
Scaffold Count 541
N50 Scaffolds 69,108 bp
Longest Scaffold 169,274 bp
Genome Size 3,579,918 bp
Protein Count 3,670
Coding Density 86.59%
GC Percentage 49.97%
Ambiguous Bases N/A
GTDB representative GCA_000012805.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM74074v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02864944
Country Barbados
Date 2014-8-15
Genbank Assembly Accession GCA_000740745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source seawater
Latitude Longitude None
Molecule Count 1
CDS Count 3,563
Refseq Category na
Seq Rel Date 2014/08/15
Spanned Gaps 0
Species Taxid 1229
SSU Count 1
Submitter Nitrification Network
Taxid 314279
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JPGN00000000.1