Sphingomonas paucimobilis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas paucimobilis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas paucimobilis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas paucimobilis; x__Sphingomonas paucimobilis NBRC 13935
NCBI Strain Identifiers NBRC 13935
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (7 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 1.47%
CheckM Strain Heterogeneity 16.67
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 84
N50 Contigs 103,884 bp
Longest Contig 435,905 bp
Scaffold Count 84
N50 Scaffolds 103,884 bp
Longest Scaffold 435,905 bp
Genome Size 4,327,402 bp
Protein Count 3,992
Coding Density 90.29%
GC Percentage 65.70%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM73989v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00018691
Country None
Date 2015-2-23
Genbank Assembly Accession GCA_000739895.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source respirator
Latitude Longitude None
Molecule Count N/A
CDS Count 3,956
Refseq Category representative genome
Seq Rel Date 2015/02/23
Spanned Gaps 0
Species Taxid 13689
SSU Count 1
Submitter National Institute of Technology and Evaluation
Taxid 1219050
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BBJS00000000.1