Pectobacterium brasiliense
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pectobacterium; s__Pectobacterium brasiliense
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Pectobacterium; s__Pectobacterium carotovorum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Pectobacterium; s__Pectobacterium carotovorum; sb__Pectobacterium carotovorum subsp. brasiliense
NCBI Strain Identifiers CFIA1001
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000294535.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.17%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 48
N50 Contigs 254,473 bp
Longest Contig 684,075 bp
Scaffold Count 25
N50 Scaffolds 1,163,329 bp
Longest Scaffold 1,524,088 bp
Genome Size 4,765,951 bp
Protein Count 4,262
Coding Density 86.71%
GC Percentage 52.10%
Ambiguous Bases N/A
GTDB representative GCA_000294535.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM73811v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02947962
Country Canada: Alberta
Date 2014-8-6
Genbank Assembly Accession GCA_000738115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source potato stem
Latitude Longitude None
Molecule Count N/A
CDS Count 4,262
Refseq Category na
Seq Rel Date 2014/08/06
Spanned Gaps 23
Species Taxid 554
SSU Count 7
Submitter Canadian Food Inspection Agency
Taxid 180957
Total Gap Length 1295
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JPSM00000000.1