Salinicola sp000737985
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Halomonadaceae; g__Salinicola; s__Salinicola sp000737985
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__; f__; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; x__unclassified Gammaproteobacteria; x__unclassified Gammaproteobacteria (miscellaneous); s__Gammaproteobacteria bacterium MFB021
NCBI Strain Identifiers MFB021
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 97.16%
CheckM Contamination 1.29%
CheckM Strain Heterogeneity 75.0
5S Count 6
16S Count 3
23S Count 6
tRNA Count 19
Contig Count 136
N50 Contigs 84,631 bp
Longest Contig 237,983 bp
Scaffold Count 136
N50 Scaffolds 84,631 bp
Longest Scaffold 237,983 bp
Genome Size 4,436,200 bp
Protein Count 3,997
Coding Density 87.47%
GC Percentage 65.71%
Ambiguous Bases 1
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name Gammaproteobacteria1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02863077
Country India: Cochin
Date 2014-8-5
Genbank Assembly Accession GCA_000737985.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source saline environment
Latitude Longitude None
Molecule Count N/A
CDS Count 3,978
Refseq Category na
Seq Rel Date 2014/08/05
Spanned Gaps 0
Species Taxid 1492922
SSU Count 4
Submitter Central Institute of Fisheries Technology, Cochin
Taxid 1492922
Total Gap Length 0
Translation Table 11
tRNA Count (total) 65
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JNVT00000000.1