Pseudomonas_E synxantha_A
Isolate HQ 5S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E synxantha_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas sp. BRG-100
NCBI Strain Identifiers BRG-100
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000263715.2)
Genome Characteristics
CheckM Completeness 99.52%
CheckM Contamination 0.61%
CheckM Strain Heterogeneity 11.11
5S Count 3
16S Count 0
23S Count 1
tRNA Count 19
Contig Count 37
N50 Contigs 344,991 bp
Longest Contig 1,151,839 bp
Scaffold Count 4
N50 Scaffolds 6,145,057 bp
Longest Scaffold 6,145,057 bp
Genome Size 6,246,661 bp
Protein Count 5,525
Coding Density 88.64%
GC Percentage 59.71%
Ambiguous Bases N/A
GTDB representative GCA_000263715.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM73795v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02947366
Country Canada:Oyen
Date 2014-8-5
Genbank Assembly Accession GCA_000737955.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude None
Molecule Count N/A
CDS Count 5,552
Refseq Category na
Seq Rel Date 2014/08/05
Spanned Gaps 33
Species Taxid 1524267
SSU Count 0
Submitter Agriculture and Agri-Food Canada
Taxid 1524267
Total Gap Length 49941
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JPRX00000000.1