Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers 254-93
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.71%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 16
Contig Count 114
N50 Contigs 103,051 bp
Longest Contig 401,514 bp
Scaffold Count 114
N50 Scaffolds 103,051 bp
Longest Scaffold 401,514 bp
Genome Size 3,954,364 bp
Protein Count 3,520
Coding Density 87.72%
GC Percentage 47.58%
Ambiguous Bases 5
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name GFC_20
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02693885
Country India
Date 2014-07-31
Genbank Assembly Accession GCA_000737025.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Diarrhea
Latitude Longitude None
Molecule Count N/A
CDS Count 3,683
Refseq Category na
Seq Rel Date 2014/07/31
Spanned Gaps 0
Species Taxid 666
SSU Count 2
Submitter Los Alamos National Laboratory
Taxid 666
Total Gap Length 0
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMBP00000000.1