Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers 1421-77
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.07%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 118
N50 Contigs 153,084 bp
Longest Contig 281,328 bp
Scaffold Count 118
N50 Scaffolds 153,084 bp
Longest Scaffold 281,328 bp
Genome Size 3,969,137 bp
Protein Count 3,559
Coding Density 87.64%
GC Percentage 47.39%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name GFC_14
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02693892
Country India
Date 2014-7-31
Genbank Assembly Accession GCA_000736785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Diarrhea
Latitude Longitude None
Molecule Count N/A
CDS Count 3,684
Refseq Category na
Seq Rel Date 2014/07/31
Spanned Gaps 0
Species Taxid 666
SSU Count 2
Submitter Los Alamos National Laboratory
Taxid 666
Total Gap Length 0
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMBL00000000.1