Methylomarinum vadi
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae; g__Methylomarinum; s__Methylomarinum vadi
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylococcaceae; g__Methylomarinum; s__Methylomarinum vadi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylococcaceae; g__Methylomarinum; s__Methylomarinum vadi
NCBI Strain Identifiers IT-4
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 3.11%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 1
N50 Contigs 4,335,162 bp
Longest Contig 4,335,162 bp
Scaffold Count 1
N50 Scaffolds 4,335,162 bp
Longest Scaffold 4,335,162 bp
Genome Size 4,335,162 bp
Protein Count 4,040
Coding Density 87.61%
GC Percentage 51.29%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM73393v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02745036
Country Japan: Taketomi Island; Okinawa
Date 2014-07-24
Genbank Assembly Accession GCA_000733935.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,005
Refseq Category representative genome
Seq Rel Date 2014/07/24
Spanned Gaps 0
Species Taxid 438855
SSU Count 3
Submitter DOE Joint Genome Institute
Taxid 438855
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JPON00000000.1