Frankia casuarinae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Frankiaceae; g__Frankia; s__Frankia casuarinae
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Frankiales; f__Frankiaceae; g__Frankia; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Frankiales; f__Frankiaceae; g__Frankia; s__Frankia sp. CeD
NCBI Strain Identifiers CeD
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000013345.1)
Genome Characteristics
CheckM Completeness 99.13%
CheckM Contamination 0.82%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 154
N50 Contigs 73,648 bp
Longest Contig 231,517 bp
Scaffold Count 120
N50 Scaffolds 97,582 bp
Longest Scaffold 393,561 bp
Genome Size 5,004,595 bp
Protein Count 4,467
Coding Density 84.73%
GC Percentage 70.20%
Ambiguous Bases 8,129
GTDB representative GCA_000013345.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name CeD
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02344567
Country Senegal
Date 2014-7-21
Genbank Assembly Accession GCA_000732115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nodules
Latitude Longitude None
Molecule Count N/A
CDS Count 4,315
Refseq Category na
Seq Rel Date 2014/07/21
Spanned Gaps 34
Species Taxid 258230
SSU Count 1
Submitter University of New Hampshire
Taxid 258230
Total Gap Length 6881
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JPGU00000000.1