Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 16 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas putida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas putida group; s__Pseudomonas putida
NCBI Strain Identifiers MC4-5222
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.45%
CheckM Strain Heterogeneity 20.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 16
Contig Count 1,152
N50 Contigs 11,078 bp
Longest Contig 63,607 bp
Scaffold Count 1,152
N50 Scaffolds 11,078 bp
Longest Scaffold 63,607 bp
Genome Size 6,858,096 bp
Protein Count 6,583
Coding Density 88.57%
GC Percentage 59.72%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM72980v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02866106
Country Netherlands: Botlek area; Rotterdam
Date 2014-07-15
Genbank Assembly Accession GCA_000729805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude None
Molecule Count N/A
CDS Count 6,579
Refseq Category na
Seq Rel Date 2014/07/15
Spanned Gaps 0
Species Taxid 303
SSU Count 1
Submitter University of Groningen
Taxid 303
Total Gap Length 0
Translation Table 11
tRNA Count (total) 33
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JOJW00000000.1