Streptomyces variegatus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces variegatus
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces flavovariabilis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces flavovariabilis
NCBI Strain Identifiers NRRL B-16367
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000955965.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 142
N50 Contigs 285,929 bp
Longest Contig 1,119,494 bp
Scaffold Count 141
N50 Scaffolds 285,929 bp
Longest Scaffold 1,119,494 bp
Genome Size 8,762,262 bp
Protein Count 7,956
Coding Density 87.99%
GC Percentage 71.24%
Ambiguous Bases N/A
GTDB representative GCA_000955965.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Doro.v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02645208
Country None
Date 2014-07-15
Genbank Assembly Accession GCA_000725785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 8,052
Refseq Category representative genome
Seq Rel Date 2014/07/15
Spanned Gaps 1
Species Taxid 284031
SSU Count 3
Submitter University of Illinois
Taxid 284031
Total Gap Length 21
Translation Table 11
tRNA Count (total) 67
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JNXD00000000.1