Dermacoccus nishinomiyaensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Dermatophilaceae; g__Dermacoccus; s__Dermacoccus nishinomiyaensis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Dermacoccaceae; g__Dermacoccus; s__Dermacoccus nishinomiyaensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Dermacoccaceae; g__Dermacoccus; s__Dermacoccus nishinomiyaensis
NCBI Strain Identifiers M25
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900447535.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 2
N50 Contigs 3,029,021 bp
Longest Contig 3,029,021 bp
Scaffold Count 2
N50 Scaffolds 3,029,021 bp
Longest Scaffold 3,029,021 bp
Genome Size 3,113,642 bp
Protein Count 2,809
Coding Density 88.11%
GC Percentage 69.04%
Ambiguous Bases N/A
GTDB representative GCA_900447535.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM72540v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02902417
Country Malaysia: Ulu Slim; Perak
Date 2014-7-14
Genbank Assembly Accession GCA_000725405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source HOT SPRING
Latitude Longitude 3.898611 N 101.497778 E
Molecule Count 2
CDS Count 2,759
Refseq Category representative genome
Seq Rel Date 2014/07/14
Spanned Gaps 0
Species Taxid 1274
SSU Count 3
Submitter University of Malaya
Taxid 1274
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None