Bacteroides fragilis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides fragilis
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides fragilis
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides fragilis
NCBI Strain Identifiers DCMOUH0042B
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000025985.1)
Genome Characteristics
CheckM Completeness 99.26%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 100.0
5S Count 6
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 3
N50 Contigs 5,141,257 bp
Longest Contig 5,141,257 bp
Scaffold Count 3
N50 Scaffolds 5,141,257 bp
Longest Scaffold 5,141,257 bp
Genome Size 5,155,157 bp
Protein Count 4,223
Coding Density 89.16%
GC Percentage 43.35%
Ambiguous Bases N/A
GTDB representative GCA_000025985.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM72479v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02892979
Country Denmark: Odense
Date 2019-05-15
Genbank Assembly Accession GCA_000724795.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude 55.3958 N 10.3886 E
Molecule Count 3
CDS Count 4,453
Refseq Category na
Seq Rel Date 2019/05/15
Spanned Gaps 0
Species Taxid 817
SSU Count 6
Submitter Odense University Hospital
Taxid 817
Total Gap Length 0
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None