Vibrio nigripulchritudo
Isolate HQ 16S/23S 6 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio nigripulchritudo
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio nigripulchritudo
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio nigripulchritudo; x__Vibrio nigripulchritudo MADA3029
NCBI Strain Identifiers MADA3029
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000222685.2)
Genome Characteristics
CheckM Completeness 99.05%
CheckM Contamination 3.39%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 6
Contig Count 131
N50 Contigs 106,802 bp
Longest Contig 376,606 bp
Scaffold Count 2
N50 Scaffolds 6,146,569 bp
Longest Scaffold 6,146,569 bp
Genome Size 6,302,926 bp
Protein Count 5,679
Coding Density 87.69%
GC Percentage 45.73%
Ambiguous Bases N/A
GTDB representative GCA_000222685.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASP_PRJEB557_v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3139032
Country None
Date 2014-6-13
Genbank Assembly Accession GCA_000723485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,691
Refseq Category na
Seq Rel Date 2014/06/13
Spanned Gaps 129
Species Taxid 28173
SSU Count 1
Submitter Genoscope CEA
Taxid 1238444
Total Gap Length 12900
Translation Table 11
tRNA Count (total) 12
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CANZ00000000.1