Janthinobacterium agaricidamnosum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Janthinobacterium; s__Janthinobacterium agaricidamnosum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Janthinobacterium; s__Janthinobacterium agaricidamnosum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Janthinobacterium; s__Janthinobacterium agaricidamnosum; x__Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628
NCBI Strain Identifiers DSM 9628
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 1
N50 Contigs 5,949,001 bp
Longest Contig 5,949,001 bp
Scaffold Count 1
N50 Scaffolds 5,949,001 bp
Longest Scaffold 5,949,001 bp
Genome Size 5,949,001 bp
Protein Count 5,127
Coding Density 88.77%
GC Percentage 61.06%
Ambiguous Bases 1,657
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name JAG1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3139017
Country None
Date 2014-1-6
Genbank Assembly Accession GCA_000723165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 5,119
Refseq Category representative genome
Seq Rel Date 2014/01/06
Spanned Gaps 0
Species Taxid 55508
SSU Count 1
Submitter HKI
Taxid 1349767
Total Gap Length 0
Translation Table 11
tRNA Count (total) 74
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None