Endozoicomonas numazuensis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Endozoicomonadaceae; g__Endozoicomonas; s__Endozoicomonas numazuensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Oceanospirillales; f__Endozoicomonadaceae; g__Endozoicomonas; s__Endozoicomonas numazuensis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Oceanospirillales; f__Endozoicomonadaceae; g__Endozoicomonas; s__Endozoicomonas numazuensis
NCBI Strain Identifiers DSM 25634
GTDB Type Material Designation type strain of species
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 99.14%
CheckM Contamination 1.66%
CheckM Strain Heterogeneity 12.5
5S Count 2
16S Count 6
23S Count 3
tRNA Count 19
Contig Count 131
N50 Contigs 124,902 bp
Longest Contig 466,961 bp
Scaffold Count 31
N50 Scaffolds 917,146 bp
Longest Scaffold 1,695,894 bp
Genome Size 6,342,227 bp
Protein Count 5,506
Coding Density 80.26%
GC Percentage 47.02%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM72263v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02851612
Country Japan: Numazu
Date 2014-7-7
Genbank Assembly Accession GCA_000722635.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sponge tissue
Latitude Longitude None
Molecule Count 0
Protein Count 5,341
Refseq Category representative genome
Seq Rel Date 2014/07/07
Spanned Gaps 100
Species Taxid 1137799
SSU Count 5
Submitter Woods Hole Oceanographic Institution
Taxid 1137799
Total Gap Length 288329
Translation Table 11
tRNA Count (total) 90
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JOKH00000000.1