Pseudorhizobium pelagicum
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Pseudorhizobium; s__Pseudorhizobium pelagicum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Pseudorhizobium; s__Pseudorhizobium pelagicum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; x__Rhizobium/Agrobacterium group; g__Pseudorhizobium; s__Pseudorhizobium pelagicum
NCBI Strain Identifiers R2-400B4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000722615.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.36%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 67
N50 Contigs 136,741 bp
Longest Contig 538,898 bp
Scaffold Count 67
N50 Scaffolds 136,741 bp
Longest Scaffold 538,898 bp
Genome Size 5,239,285 bp
Protein Count 5,062
Coding Density 88.28%
GC Percentage 62.43%
Ambiguous Bases 626
GTDB representative GCA_000722615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM72262v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02864220
Country Spain: Alicante
Date 2014-7-7
Genbank Assembly Accession GCA_000722625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sea water
Latitude Longitude None
Molecule Count N/A
CDS Count 5,074
Refseq Category na
Seq Rel Date 2014/07/07
Spanned Gaps 0
Species Taxid 1509405
SSU Count 2
Submitter University Miguel Hernandez
Taxid 1509405
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JOKJ00000000.1