Mycetocola saprophilus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Microbacteriaceae; g__Mycetocola; s__Mycetocola saprophilus
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Mycetocola; s__Mycetocola saprophilus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Mycetocola; s__Mycetocola saprophilus
NCBI Strain Identifiers NRRL B-24119
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.49%
CheckM Contamination 0.84%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 20
N50 Contigs 1,242,393 bp
Longest Contig 1,442,098 bp
Scaffold Count 20
N50 Scaffolds 1,242,393 bp
Longest Scaffold 1,442,098 bp
Genome Size 3,451,363 bp
Protein Count 3,165
Coding Density 89.82%
GC Percentage 66.14%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM71808v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02645226
Country Japan: Yamagata prefecture
Date 2014-07-02
Genbank Assembly Accession GCA_000718085.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mushroom
Latitude Longitude None
Molecule Count N/A
CDS Count 3,148
Refseq Category representative genome
Seq Rel Date 2014/07/02
Spanned Gaps 0
Species Taxid 76636
SSU Count 1
Submitter University of Illinois
Taxid 76636
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JOEC00000000.1