Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 5-366-08_S3_C3
NCBI Strain Identifiers 5-366-08_S3_C3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.53%
CheckM Strain Heterogeneity 55.56
5S Count 8
16S Count 9
23S Count 8
tRNA Count 20
Contig Count 102
N50 Contigs 295,723 bp
Longest Contig 796,714 bp
Scaffold Count 102
N50 Scaffolds 295,723 bp
Longest Scaffold 796,714 bp
Genome Size 5,253,447 bp
Protein Count 4,956
Coding Density 87.63%
GC Percentage 50.71%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM71426v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02680142
Country Tanzania
Date 2014-06-27
Genbank Assembly Accession GCA_000714265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,389
Refseq Category na
Seq Rel Date 2014/06/27
Spanned Gaps 0
Species Taxid 562
SSU Count 10
Submitter IGS
Taxid 1444187
Total Gap Length 0
Translation Table 11
tRNA Count (total) 123
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JOQV00000000.1