Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 4-203-08_S1_C3
NCBI Strain Identifiers 4-203-08_S1_C3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.65%
CheckM Strain Heterogeneity 77.78
5S Count 7
16S Count 8
23S Count 6
tRNA Count 19
Contig Count 167
N50 Contigs 138,743 bp
Longest Contig 359,862 bp
Scaffold Count 167
N50 Scaffolds 138,743 bp
Longest Scaffold 359,862 bp
Genome Size 5,302,353 bp
Protein Count 5,110
Coding Density 87.65%
GC Percentage 50.74%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM71397v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02680223
Country Tanzania
Date 2014-06-27
Genbank Assembly Accession GCA_000713975.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,548
Refseq Category na
Seq Rel Date 2014/06/27
Spanned Gaps 0
Species Taxid 562
SSU Count 8
Submitter IGS
Taxid 1444113
Total Gap Length 0
Translation Table 11
tRNA Count (total) 106
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JOQG00000000.1