Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 4-203-08_S1_C2
NCBI Strain Identifiers 4-203-08_S1_C2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 1.26%
CheckM Strain Heterogeneity 86.67
5S Count 9
16S Count 12
23S Count 8
tRNA Count 19
Contig Count 183
N50 Contigs 131,458 bp
Longest Contig 492,531 bp
Scaffold Count 183
N50 Scaffolds 131,458 bp
Longest Scaffold 492,531 bp
Genome Size 5,325,397 bp
Protein Count 5,097
Coding Density 87.40%
GC Percentage 50.76%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM71394v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02680215
Country Tanzania
Date 2014-06-27
Genbank Assembly Accession GCA_000713945.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,529
Refseq Category na
Seq Rel Date 2014/06/27
Spanned Gaps 0
Species Taxid 562
SSU Count 13
Submitter IGS
Taxid 1444088
Total Gap Length 0
Translation Table 11
tRNA Count (total) 119
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JOQF00000000.1