Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 3-475-03_S1_C2
NCBI Strain Identifiers 3-475-03_S1_C2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 1.09%
CheckM Strain Heterogeneity 77.78
5S Count 10
16S Count 6
23S Count 11
tRNA Count 20
Contig Count 175
N50 Contigs 129,729 bp
Longest Contig 354,721 bp
Scaffold Count 175
N50 Scaffolds 129,729 bp
Longest Scaffold 354,721 bp
Genome Size 5,512,221 bp
Protein Count 5,347
Coding Density 87.27%
GC Percentage 50.61%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM71390v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02680258
Country Tanzania
Date 2014-06-27
Genbank Assembly Accession GCA_000713905.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,800
Refseq Category na
Seq Rel Date 2014/06/27
Spanned Gaps 0
Species Taxid 562
SSU Count 10
Submitter IGS
Taxid 1444087
Total Gap Length 0
Translation Table 11
tRNA Count (total) 129
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JOQC00000000.1