Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 6-537-08_S3_C2
NCBI Strain Identifiers 6-537-08_S3_C2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 1.49%
CheckM Strain Heterogeneity 57.14
5S Count 8
16S Count 8
23S Count 9
tRNA Count 19
Contig Count 98
N50 Contigs 178,144 bp
Longest Contig 532,471 bp
Scaffold Count 98
N50 Scaffolds 178,144 bp
Longest Scaffold 532,471 bp
Genome Size 5,160,700 bp
Protein Count 4,909
Coding Density 87.93%
GC Percentage 50.56%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM71341v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02680158
Country Tanzania
Date 2014-6-27
Genbank Assembly Accession GCA_000713415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,278
Refseq Category na
Seq Rel Date 2014/06/27
Spanned Gaps 0
Species Taxid 562
SSU Count 10
Submitter IGS
Taxid 1444174
Total Gap Length 0
Translation Table 11
tRNA Count (total) 129
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JORX00000000.1