Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 2-222-05_S4_C1
NCBI Strain Identifiers 2-222-05_S4_C1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 1.91%
CheckM Strain Heterogeneity 72.73
5S Count 7
16S Count 9
23S Count 9
tRNA Count 20
Contig Count 161
N50 Contigs 84,455 bp
Longest Contig 204,549 bp
Scaffold Count 161
N50 Scaffolds 84,455 bp
Longest Scaffold 204,549 bp
Genome Size 4,862,082 bp
Protein Count 4,697
Coding Density 87.95%
GC Percentage 50.95%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM71327v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02680250
Country Tanzania
Date 2014-6-27
Genbank Assembly Accession GCA_000713275.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,026
Refseq Category na
Seq Rel Date 2014/06/27
Spanned Gaps 0
Species Taxid 562
SSU Count 11
Submitter IGS
Taxid 1444206
Total Gap Length 0
Translation Table 11
tRNA Count (total) 118
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JORR00000000.1