Lacticaseibacillus rhamnosus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus rhamnosus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus; x__Lactobacillus rhamnosus E800
NCBI Strain Identifiers E800
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000615245.1)
Genome Characteristics
CheckM Completeness 99.35%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 83
N50 Contigs 84,454 bp
Longest Contig 194,806 bp
Scaffold Count 83
N50 Scaffolds 84,454 bp
Longest Scaffold 194,806 bp
Genome Size 3,031,620 bp
Protein Count 2,906
Coding Density 85.03%
GC Percentage 46.62%
Ambiguous Bases 1
GTDB representative GCA_000615245.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name E800
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02602919
Country None
Date 2014-06-26
Genbank Assembly Accession GCA_000712495.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,049
Refseq Category na
Seq Rel Date 2014/06/26
Spanned Gaps 0
Species Taxid 47715
SSU Count 3
Submitter Helsinki University
Taxid 1457191
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JDRW00000000.1