Listeria monocytogenes
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
NCBI Strain Identifiers HPB2088
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900187225.1)
Genome Characteristics
CheckM Completeness 99.45%
CheckM Contamination 0.27%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 38
N50 Contigs 211,340 bp
Longest Contig 387,579 bp
Scaffold Count 38
N50 Scaffolds 211,340 bp
Longest Scaffold 387,579 bp
Genome Size 2,979,080 bp
Protein Count 2,974
Coding Density 89.89%
GC Percentage 37.88%
Ambiguous Bases N/A
GTDB representative GCA_900187225.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM71242v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02867555
Country Canada: Calgary; AB
Date 2014-06-26
Genbank Assembly Accession GCA_000712425.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Food Processing Facility
Latitude Longitude None
Molecule Count N/A
CDS Count 3,009
Refseq Category na
Seq Rel Date 2014/06/26
Spanned Gaps 0
Species Taxid 1639
SSU Count 2
Submitter Health Canada
Taxid 1639
Total Gap Length 0
Translation Table 11
tRNA Count (total) 62
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JOKU00000000.1