Pseudomonas_E aeruginosa_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E aeruginosa_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas putida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas putida group; s__Pseudomonas putida; x__Pseudomonas putida T2-2
NCBI Strain Identifiers T2-2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002927165.1)
Genome Characteristics
CheckM Completeness 98.88%
CheckM Contamination 1.67%
CheckM Strain Heterogeneity 5.56
5S Count 2
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 389
N50 Contigs 28,718 bp
Longest Contig 97,690 bp
Scaffold Count 389
N50 Scaffolds 28,718 bp
Longest Scaffold 97,690 bp
Genome Size 5,524,229 bp
Protein Count 5,299
Coding Density 88.62%
GC Percentage 62.57%
Ambiguous Bases N/A
GTDB representative GCA_002927165.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name De novo Assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02869884
Country Malaysia
Date 2014-06-23
Genbank Assembly Accession GCA_000710785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source tongue
Latitude Longitude None
Molecule Count N/A
CDS Count 5,268
Refseq Category na
Seq Rel Date 2014/06/23
Spanned Gaps 0
Species Taxid 303
SSU Count 3
Submitter University of Malaya
Taxid 1449987
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JALX00000000.1