Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pantoea; s__Pantoea ananatis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__Pantoea ananatis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__Pantoea ananatis
NCBI Strain Identifiers PA4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000710035.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.3%
CheckM Strain Heterogeneity 33.33
5S Count 3
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 17
N50 Contigs 726,202 bp
Longest Contig 1,925,778 bp
Scaffold Count 17
N50 Scaffolds 726,202 bp
Longest Scaffold 1,925,778 bp
Genome Size 5,163,485 bp
Protein Count 4,883
Coding Density 86.49%
GC Percentage 53.57%
Ambiguous Bases N/A
GTDB representative GCA_000710035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name PAPA4-4.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02739930
Country South Africa: Free State
Date 2014-6-18
Genbank Assembly Accession GCA_000710015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source onion seed
Latitude Longitude None
Molecule Count N/A
CDS Count 4,865
Refseq Category na
Seq Rel Date 2014/06/18
Spanned Gaps 0
Species Taxid 553
SSU Count 1
Submitter Centre for Microbial Ecology and Genomics
Taxid 553
Total Gap Length 0
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMJK00000000.1