Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus
NCBI Strain Identifiers CFSAN007456
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.26%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 56
N50 Contigs 480,822 bp
Longest Contig 878,464 bp
Scaffold Count 56
N50 Scaffolds 480,822 bp
Longest Scaffold 878,464 bp
Genome Size 5,206,921 bp
Protein Count 4,779
Coding Density 86.83%
GC Percentage 45.24%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM70728v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02741392
Country USA: MD
Date 2016-5-31
Genbank Assembly Accession GCA_000707285.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source oyster
Latitude Longitude None
Molecule Count N/A
CDS Count 4,990
Refseq Category na
Seq Rel Date 2016/05/31
Spanned Gaps 0
Species Taxid 670
SSU Count 1
Submitter FDA/CFSAN
Taxid 670
Total Gap Length 0
Translation Table 11
tRNA Count (total) 92
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JNUK00000000.2