Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 16 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus
NCBI Strain Identifiers CFSAN012493
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 16
Contig Count 47
N50 Contigs 329,201 bp
Longest Contig 635,564 bp
Scaffold Count 47
N50 Scaffolds 329,201 bp
Longest Scaffold 635,564 bp
Genome Size 5,123,258 bp
Protein Count 4,631
Coding Density 86.98%
GC Percentage 45.16%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM70726v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02741401
Country USA: MD
Date 2016-5-31
Genbank Assembly Accession GCA_000707265.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source oyster
Latitude Longitude None
Molecule Count N/A
CDS Count 4,841
Refseq Category na
Seq Rel Date 2016/05/31
Spanned Gaps 0
Species Taxid 670
SSU Count 2
Submitter FDA/CFSAN
Taxid 670
Total Gap Length 0
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JNUI00000000.2