Bifidobacterium indicum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium indicum
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium indicum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium indicum; x__Bifidobacterium indicum LMG 11587 = DSM 20214
NCBI Strain Identifiers LMG 11587
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (6 genomes in species cluster)
Genome Characteristics
CheckM Completeness 96.31%
CheckM Contamination 0.61%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 1
N50 Contigs 1,734,546 bp
Longest Contig 1,734,546 bp
Scaffold Count 1
N50 Scaffolds 1,734,546 bp
Longest Scaffold 1,734,546 bp
Genome Size 1,734,546 bp
Protein Count 1,364
Coding Density 88.33%
GC Percentage 60.49%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM70676v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN05771123
Country None
Date 2014-6-13
Genbank Assembly Accession GCA_000706765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 1,353
Refseq Category na
Seq Rel Date 2014/06/13
Spanned Gaps 0
Species Taxid 1691
SSU Count 3
Submitter University of Parma
Taxid 1341694
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None