Klebsiella pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__Klebsiella pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__Klebsiella pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__Klebsiella pneumoniae; x__Klebsiella pneumoniae UCI 17
NCBI Strain Identifiers UCI 17
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000742135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.02%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 9
23S Count 9
tRNA Count 20
Contig Count 33
N50 Contigs 2,861,604 bp
Longest Contig 2,861,604 bp
Scaffold Count 4
N50 Scaffolds 3,949,705 bp
Longest Scaffold 3,949,705 bp
Genome Size 5,733,582 bp
Protein Count 5,329
Coding Density 87.09%
GC Percentage 57.13%
Ambiguous Bases 1
GTDB representative GCA_000742135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Kleb_pneu_UCI_17_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02356597
Country USA: Irvine; CA
Date 2014-06-13
Genbank Assembly Accession GCA_000706585.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,685
Refseq Category na
Seq Rel Date 2014/06/13
Spanned Gaps 29
Species Taxid 573
SSU Count 8
Submitter Broad Institute
Taxid 1400170
Total Gap Length 26982
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JNVF00000000.1