Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis H2375
NCBI Strain Identifiers H2375
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 74
N50 Contigs 131,316 bp
Longest Contig 329,195 bp
Scaffold Count 69
N50 Scaffolds 143,477 bp
Longest Scaffold 329,195 bp
Genome Size 4,423,530 bp
Protein Count 4,126
Coding Density 90.15%
GC Percentage 65.59%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_H2375_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02599173
Country India: Tiruvallur
Date 2014-6-13
Genbank Assembly Accession GCA_000706065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,262
Refseq Category na
Seq Rel Date 2014/06/13
Spanned Gaps 5
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1448827
Total Gap Length 3852
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JKIA00000000.1