Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis 2231BH
NCBI Strain Identifiers 2231BH
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 1.89%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 97
N50 Contigs 97,103 bp
Longest Contig 223,185 bp
Scaffold Count 95
N50 Scaffolds 97,103 bp
Longest Scaffold 223,185 bp
Genome Size 4,453,263 bp
Protein Count 4,176
Coding Density 90.47%
GC Percentage 65.64%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_2231BH_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02567700
Country Romania
Date 2014-6-13
Genbank Assembly Accession GCA_000705865.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,335
Refseq Category na
Seq Rel Date 2014/06/13
Spanned Gaps 2
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1438861
Total Gap Length 200
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JKBT00000000.1