Rhizobium phaseoli
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__Rhizobium phaseoli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__Rhizobium leguminosarum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; x__Rhizobium/Agrobacterium group; g__Rhizobium; s__Rhizobium leguminosarum; x__Rhizobium leguminosarum bv. phaseoli; x__Rhizobium leguminosarum bv. phaseoli CCGM1
NCBI Strain Identifiers CCGM1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003985125.1)
Genome Characteristics
CheckM Completeness 99.58%
CheckM Contamination 0.06%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 139
N50 Contigs 129,009 bp
Longest Contig 297,927 bp
Scaffold Count 55
N50 Scaffolds 785,254 bp
Longest Scaffold 1,757,773 bp
Genome Size 6,871,922 bp
Protein Count 6,629
Coding Density 86.09%
GC Percentage 61.42%
Ambiguous Bases 177
GTDB representative GCA_003985125.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name CCGM1.1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02370996
Country Mexico: Morelos
Date 2014-6-12
Genbank Assembly Accession GCA_000705615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root nodules
Latitude Longitude None
Molecule Count N/A
CDS Count 6,725
Refseq Category na
Seq Rel Date 2014/06/12
Spanned Gaps 84
Species Taxid 384
SSU Count 3
Submitter Centro de Ciencias Genomicas, UNAM
Taxid 1408223
Total Gap Length 33038
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JFGP00000000.1