Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 3-073-06_S3_C2
NCBI Strain Identifiers 3-073-06_S3_C2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.88%
CheckM Contamination 2.3%
CheckM Strain Heterogeneity 86.67
5S Count 9
16S Count 5
23S Count 5
tRNA Count 19
Contig Count 226
N50 Contigs 80,883 bp
Longest Contig 179,652 bp
Scaffold Count 226
N50 Scaffolds 80,883 bp
Longest Scaffold 179,652 bp
Genome Size 5,256,796 bp
Protein Count 5,317
Coding Density 86.98%
GC Percentage 50.64%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM70490v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02687522
Country Tanzania
Date 2014-06-11
Genbank Assembly Accession GCA_000704905.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,784
Refseq Category na
Seq Rel Date 2014/06/11
Spanned Gaps 0
Species Taxid 562
SSU Count 5
Submitter IGS
Taxid 1444166
Total Gap Length 0
Translation Table 11
tRNA Count (total) 111
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JNRX00000000.1