Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 2-222-05_S1_C1
NCBI Strain Identifiers 2-222-05_S1_C1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 3.55%
CheckM Strain Heterogeneity 86.11
5S Count 8
16S Count 12
23S Count 14
tRNA Count 20
Contig Count 108
N50 Contigs 190,529 bp
Longest Contig 434,143 bp
Scaffold Count 108
N50 Scaffolds 190,529 bp
Longest Scaffold 434,143 bp
Genome Size 4,965,006 bp
Protein Count 4,758
Coding Density 87.12%
GC Percentage 50.53%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM70396v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02680155
Country Tanzania
Date 2014-06-11
Genbank Assembly Accession GCA_000703965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,164
Refseq Category na
Seq Rel Date 2014/06/11
Spanned Gaps 0
Species Taxid 562
SSU Count 12
Submitter IGS
Taxid 1444041
Total Gap Length 0
Translation Table 11
tRNA Count (total) 131
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JNQK00000000.1