Escherichia coli_D
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 1-392-07_S1_C1
NCBI Strain Identifiers 1-392-07_S1_C1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.61%
CheckM Strain Heterogeneity 83.33
5S Count 7
16S Count 4
23S Count 5
tRNA Count 19
Contig Count 174
N50 Contigs 146,271 bp
Longest Contig 313,836 bp
Scaffold Count 174
N50 Scaffolds 146,271 bp
Longest Scaffold 313,836 bp
Genome Size 5,422,993 bp
Protein Count 5,183
Coding Density 87.72%
GC Percentage 50.42%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM70386v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02680099
Country Tanzania
Date 2014-6-11
Genbank Assembly Accession GCA_000703865.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,666
Refseq Category na
Seq Rel Date 2014/06/11
Spanned Gaps 0
Species Taxid 562
SSU Count 5
Submitter IGS
Taxid 1444053
Total Gap Length 0
Translation Table 11
tRNA Count (total) 127
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JNPT00000000.1