Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O128:H2; x__Escherichia coli O128:H2 str. 2011C-3317
NCBI Strain Identifiers 2011C-3317
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.55%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 16
N50 Contigs 4,556,453 bp
Longest Contig 4,556,453 bp
Scaffold Count 16
N50 Scaffolds 4,556,453 bp
Longest Scaffold 4,556,453 bp
Genome Size 5,597,432 bp
Protein Count 5,326
Coding Density 87.36%
GC Percentage 50.67%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Ec2011C-3317
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353022
Country USA
Date 2014-6-11
Genbank Assembly Accession GCA_000703345.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,734
Refseq Category na
Seq Rel Date 2014/06/11
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter CDC
Taxid 1446581
Total Gap Length 0
Translation Table 11
tRNA Count (total) 93
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JASU00000000.1