Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O145:H25; x__Escherichia coli O145:H25 str. 07-3858
NCBI Strain Identifiers 07-3858
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.38%
CheckM Strain Heterogeneity 41.67
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 21
N50 Contigs 623,354 bp
Longest Contig 2,416,165 bp
Scaffold Count 21
N50 Scaffolds 623,354 bp
Longest Scaffold 2,416,165 bp
Genome Size 5,626,191 bp
Protein Count 5,572
Coding Density 86.80%
GC Percentage 50.62%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Ec07-3858
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02352916
Country USA
Date 2014-6-11
Genbank Assembly Accession GCA_000703225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,949
Refseq Category na
Seq Rel Date 2014/06/11
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter CDC
Taxid 1446583
Total Gap Length 0
Translation Table 11
tRNA Count (total) 101
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JASO00000000.1