Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Bareilly; x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000203
NCBI Strain Identifiers CFSAN000203
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 279
N50 Contigs 41,844 bp
Longest Contig 245,569 bp
Scaffold Count 279
N50 Scaffolds 41,844 bp
Longest Scaffold 245,569 bp
Genome Size 4,649,613 bp
Protein Count 4,401
Coding Density 87.69%
GC Percentage 52.27%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN000203_01.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01942249
Country Pakistan
Date 2014-06-05
Genbank Assembly Accession GCA_000698615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source red chili powder
Latitude Longitude None
Molecule Count N/A
CDS Count 4,661
Refseq Category na
Seq Rel Date 2014/06/05
Spanned Gaps 0
Species Taxid 28901
SSU Count 3
Submitter FDA
Taxid 1173453
Total Gap Length 0
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMMI00000000.1