Pseudomonas_E simiae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E simiae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas simiae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas simiae
NCBI Strain Identifiers WCS417
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900111895.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.05%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 6
N50 Contigs 1,317,051 bp
Longest Contig 2,979,141 bp
Scaffold Count 1
N50 Scaffolds 6,169,071 bp
Longest Scaffold 6,169,071 bp
Genome Size 6,169,071 bp
Protein Count 5,596
Coding Density 89.65%
GC Percentage 60.32%
Ambiguous Bases 1
GTDB representative GCA_900111895.1
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name ASM69826v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02739889
Country Netherlands: Flevoland
Date 2014-6-5
Genbank Assembly Accession GCA_000698265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Wheat rhizosphere
Latitude Longitude None
Molecule Count 1
CDS Count 5,623
Refseq Category na
Seq Rel Date 2014/06/05
Spanned Gaps 5
Species Taxid 321846
SSU Count 2
Submitter Utrecht University, Utrecht, NETHERLANDS
Taxid 321846
Total Gap Length 999
Translation Table 11
tRNA Count (total) 65
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None