Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium avium complex (MAC); s__Mycobacterium avium; sb__Mycobacterium avium subsp. hominissuis; x__Mycobacterium avium subsp. hominissuis A5
NCBI Strain Identifiers A5
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000174035.1)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 50
N50 Contigs 342,227 bp
Longest Contig 804,988 bp
Scaffold Count 50
N50 Scaffolds 342,227 bp
Longest Scaffold 804,988 bp
Genome Size 4,870,506 bp
Protein Count 4,539
Coding Density 91.71%
GC Percentage 69.40%
Ambiguous Bases N/A
GTDB representative GCA_000174035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Maq reference guided assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02756836
Country USA
Date 2014-6-2
Genbank Assembly Accession GCA_000696715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude None
Molecule Count N/A
CDS Count 4,559
Refseq Category na
Seq Rel Date 2014/06/02
Spanned Gaps 0
Species Taxid 1764
SSU Count 1
Submitter Oregon State University
Taxid 1160711
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AUZQ00000000.1