Rhizobium rhizogenes
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__Rhizobium rhizogenes
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Agrobacterium; s__Agrobacterium rhizogenes
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; x__Rhizobium/Agrobacterium group; g__Agrobacterium; s__Agrobacterium rhizogenes; x__Agrobacterium rhizogenes NBRC 13257
NCBI Strain Identifiers NBRC 13257
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (27 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.48%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 53
N50 Contigs 475,718 bp
Longest Contig 814,457 bp
Scaffold Count 53
N50 Scaffolds 475,718 bp
Longest Scaffold 814,457 bp
Genome Size 7,044,473 bp
Protein Count 6,599
Coding Density 88.44%
GC Percentage 59.91%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM69609v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00016801
Country None
Date 2014-05-17
Genbank Assembly Accession GCA_000696095.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,579
Refseq Category representative genome
Seq Rel Date 2014/05/17
Spanned Gaps 0
Species Taxid 359
SSU Count 1
Submitter National Institute of Technology and Evaluation
Taxid 1220581
Total Gap Length 0
Translation Table 11
tRNA Count (total) 51
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BAYX00000000.1