Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli UCI 66
NCBI Strain Identifiers UCI 66
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 4
23S Count 8
tRNA Count 20
Contig Count 33
N50 Contigs 363,067 bp
Longest Contig 655,047 bp
Scaffold Count 13
N50 Scaffolds 2,830,801 bp
Longest Scaffold 2,830,801 bp
Genome Size 5,259,900 bp
Protein Count 4,940
Coding Density 87.28%
GC Percentage 50.58%
Ambiguous Bases 1
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_UCI_66_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02581272
Country USA: California
Date 2014-5-19
Genbank Assembly Accession GCA_000692895.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,345
Refseq Category na
Seq Rel Date 2014/05/19
Spanned Gaps 20
Species Taxid 562
SSU Count 2
Submitter Broad Institute
Taxid 1438696
Total Gap Length 32365
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMVW00000000.1