Escherichia coli_D
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli UCI 58
NCBI Strain Identifiers UCI 58
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.16%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 4
tRNA Count 18
Contig Count 34
N50 Contigs 539,623 bp
Longest Contig 942,602 bp
Scaffold Count 12
N50 Scaffolds 2,592,594 bp
Longest Scaffold 2,592,594 bp
Genome Size 5,129,989 bp
Protein Count 4,688
Coding Density 87.55%
GC Percentage 50.65%
Ambiguous Bases 1
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_UCI_58_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02581264
Country USA: California
Date 2014-5-19
Genbank Assembly Accession GCA_000692855.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,079
Refseq Category na
Seq Rel Date 2014/05/19
Spanned Gaps 22
Species Taxid 562
SSU Count 2
Submitter Broad Institute
Taxid 1438694
Total Gap Length 58538
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMVU00000000.1