Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli CHS 69
NCBI Strain Identifiers CHS 69
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 4
23S Count 4
tRNA Count 19
Contig Count 72
N50 Contigs 231,547 bp
Longest Contig 489,019 bp
Scaffold Count 12
N50 Scaffolds 3,008,490 bp
Longest Scaffold 3,008,490 bp
Genome Size 5,388,736 bp
Protein Count 5,004
Coding Density 85.56%
GC Percentage 50.71%
Ambiguous Bases 1
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_CHS_69_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02581371
Country USA: North Carolina
Date 2014-05-19
Genbank Assembly Accession GCA_000692715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,464
Refseq Category na
Seq Rel Date 2014/05/19
Spanned Gaps 60
Species Taxid 562
SSU Count 3
Submitter Broad Institute
Taxid 1438685
Total Gap Length 138040
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMVN00000000.1