Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli BIDMC 63
NCBI Strain Identifiers BIDMC 63
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 19
N50 Contigs 789,640 bp
Longest Contig 1,039,848 bp
Scaffold Count 6
N50 Scaffolds 2,829,173 bp
Longest Scaffold 2,829,173 bp
Genome Size 5,162,337 bp
Protein Count 4,809
Coding Density 86.56%
GC Percentage 50.80%
Ambiguous Bases 1
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_BIDMC_63_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02581284
Country USA: Boston
Date 2014-5-19
Genbank Assembly Accession GCA_000692435.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source SWAB
Latitude Longitude None
Molecule Count N/A
CDS Count 5,197
Refseq Category na
Seq Rel Date 2014/05/19
Spanned Gaps 13
Species Taxid 562
SSU Count 6
Submitter Broad Institute
Taxid 1438671
Total Gap Length 76618
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMUZ00000000.1